![]() ![]() MSstats.csv - protein abundance report formatted for use with MSstats (see the tutorial), generated by IonQuant.protein.fas - FASTA file containing the FDR-filtered protein sequences identified in the analysis, generated by Philosopher.Quantification results from MS1-based isotopic labeling experiments are generated by IonQuant and reported at the peptide ion, peptide, and protein levels. Files containing ‘abundance’ are generated by converting ratio tables back to the intensity (ion abundance) scale. Files containing ‘ratio’ in the file name report ratio to the reference/bridge channel in each plex if specified, or a ratio to the average abundance within each plex (virtual reference approach). Two sets of isobaric labeling quantification reports are generated, one set with abundances and one with ratios. Isobaric labeling reports are found in the ‘tmt-report’ folder, generated by TMT-Integrator. diann-output files (see DIA-NN documentation). ![]() combined_protein.tsv (from Philosopher, overwritted by IonQuant).combined_peptide.tsv (from Philosopher, overwritted by IonQuant).combined_modified_peptide.tsv (from IonQuant).combined_ion.tsv (from Philosopher, overwritted by IonQuant).protein.tsv (from Philosopher, overwritted by IonQuant).peptide.tsv (from Philosopher, overwritted by IonQuant).ion.tsv (from Philosopher, overwritted by IonQuant).psm.tsv (from Philosopher, updated by IonQuant).Log files are saved automatically (with a timestamp) if an analysis finishes successfully, but they can also be exported (with the ‘Export Log’ button on the ‘Run’ tab) to help with troubleshooting if an analysis fails.įragPipe also uses various configuration and intermediate files listed here.Īlso see our guide to using FragPipe. Outputs that take the name of the input LC-MS file are shown with the generic ‘filename’ placeholder here. Main report files are either comma-separated (csv) or tab-separated (tsv), and their column contents are described here. This page lists the different output files generated by FragPipe. Output files will depend on the workflow used and how experiments/groups are set on the ‘Workflow’ tab. Morningstar Created by: RedHerringLabs 25.Guide to FragPipe results | FragPipe FragPipe A complete proteomics pipeline with the MSFragger search engine at heart View on GitHub Guide to FragPipe results Monsters' Den: Book of Dread Created by: garin 24. Super Stackers 2 Created by: inXile Ent 22. Bubble Tanks 2 Created by: HeroInteractive 20. Amorphous+ Created by: innocuousGames 18. Platform Racing 2 Created by: Jiggmin 16. The Last Stand 2 Created by: ConArtist 15. The Space Game Created by: CasualCollective 14. Desktop Tower Defence 1.5 Created by: preecep 13. ![]() Fragger walkthrough pro#Desktop TD Pro Created by: CasualCollective 12. Dolphin Olympics 2 Created by: arawkins 11. Mastermind: World Conquerer Created by: theswine 10. Bloons Tower Defence 3 Created by: Ninjakiwi 9. Learn to Fly Created by: light bringer777 7. Fragger walkthrough upgrade#Upgrade Complete Created by: ArmorGames 4. Gemcraft: Chapter 0 Created by: gameinabottle 3. ![]()
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